PyOR Simulation Examples
========================

Quantum Object and Library
---------------------------

- `Introduction Quantum Library <Examples/Quantum_ObjectAndLibrary/Introduction_QuantumLibrary.ipynb>`_
- `Introduction Quantum Objects <Examples/Quantum_ObjectAndLibrary/Introduction_QuantumObjects.ipynb>`_
- `Partial Trace <Examples/Quantum_ObjectAndLibrary/Partial_Trace.ipynb>`_

Solids
------

- `Extract Crystal Orientations <Examples/Solids/Extract_CrstalOrientations.ipynb>`_
- `MAS CSA <Examples/Solids/MAS_CSA.ipynb>`_
- `Powder Average CSA <Examples/Solids/PowderAverage_CSA.ipynb>`_
- `Powder Average Quadrupole <Examples/Solids/PowderAverage_Quadrupole.ipynb>`_

Relaxation
----------

- `NOE Hilbert Lindblad <Examples/Relaxation/NOE_Hilbert_Lindblad.ipynb>`_
- `NOE Hilbert Redfield <Examples/Relaxation/NOE_Hilbert_Redfield.ipynb>`_
- `NOE Liouville Lindblad <Examples/Relaxation/NOE_Liouville_Lindblad.ipynb>`_
- `NOE Liouville Redfield <Examples/Relaxation/NOE_Lioville_Redfield.ipynb>`_

Density Matrix
--------------

- `Equilibrium Density Matrix <Examples/Density_Matrix/EqulibriumDensityMatrix.ipynb>`_

Schrodinger
-----------

- `Schrodinger ODE <Examples/Schrodinger/Schrodinger_ODE.ipynb>`_
- `Schrodinger Propagator <Examples/Schrodinger/Schrodinger_Propagator.ipynb>`_

Basis
-----

- `Product Operators Cartesian (any spin half) <Examples/Basis/ProductOperators_Cartesian_AnySpinHalf.ipynb>`_
- `Product Operators PMZ (any spin half) <Examples/Basis/ProductOperators_PMZ_AnySpinHalf.ipynb>`_
- `Product Operators Spherical Tensors (any spin half) <Examples/Basis/ProductOperators_SphericalTensors_AnySpinHalf.ipynb>`_
- `Product Operators Spherical Tensors (spin half) <Examples/Basis/ProductOperators_SphericalTensors_SpinHalf.ipynb>`_
- `Product Operators Spherical Tensors (spin one) <Examples/Basis/ProductOperators_SphericalTensors_SpinOne.ipynb>`_
- `Product Operators Spherical Tensors (two spin half) <Examples/Basis/ProductOperators_SphericalTensors_TwoSpinHalf.ipynb>`_
- `Product Operators Zeeman PMZ Basis <Examples/Basis/ProductOperators_Zeeman_PMZBasis.ipynb>`_
- `Zeeman Singlet Triplet <Examples/Basis/Zeeman_SingletTriplet.ipynb>`_
- `Basis Change of the System (Spinoperators and States) <Examples/Basis/Basis_Change_of_the_System_(Spinoperators_and_States).ipynb>`_

Spin Operator
-------------

- `Single Spin <Examples/Spin_Operator/SingleSpin.ipynb>`_
- `Two Spins <Examples/Spin_Operator/TwoSpins.ipynb>`_

Liquid State NMR 1D
-------------------

- `1D Pulse Acquisition <Examples/Liquid_State_NMR_1D/1D_Pulse_Acquisition.ipynb>`_
- `1D Pulse Acquisition with user defined Hamiltonians <Examples/Liquid_State_NMR_1D/1D_Pulse_Acquisition_UserDefinedHamiltonian.ipynb>`_
- `1D Pulse Acquisition with user defined Hamiltonians (Basis change to Hamiltonian eigen states) <Examples/Liquid_State_NMR_1D/1D_Pulse_Acquisition_UserDefinedHamiltonian_Basis_HamiltonianEigenStates.ipynb>`_
- `1D Pulse Acquisition with singlet triplet basis <Examples/Liquid_State_NMR_1D/1D_Pulse_Acquisition_SingletTriplet.ipynb>`_

Nonlinear NMR Maser Data Analysis
---------------------------------

- `PyOR Maser Simulation Analyzer <Examples/Nonlinear_NMR/Maser_SimulationDataAnalysis/PyOR_MaserAnalyzer.ipynb>`_
- `PyOR Maser Data Analyzer (Bruker) <Examples/Nonlinear_NMR/Maser_DataAnalyzer_Bruker/PyOR_MaserAnalyzer.ipynb>`_

Shape Pulse
-----------

- `Shaped Pulse <Examples/Shape_Pulse/ShapedPulse.ipynb>`_
- `Shaped Pulse Final Mz <Examples/Shape_Pulse/ShapedPulse_FinalMz.ipynb>`_
- `Shaped Pulse Profile <Examples/Shape_Pulse/ShapedPulse_Profile.ipynb>`_
- `Shaped Pulse Propagator <Examples/Shape_Pulse/ShapedPulse_Propagator.ipynb>`_
- `Shaped Pulse Relaxation Radiationdamping <Examples/Shape_Pulse/ShapedPulse_Relaxation_Radiationdamping.ipynb>`_

States
------

- `Bloch Vector <Examples/States/BlochVector.ipynb>`_
- `Coupled States <Examples/States/CoupledStates.ipynb>`_
- `Ket and Bra <Examples/States/KetAndBra.ipynb>`_
- `Zeeman States <Examples/States/ZeemanStates.ipynb>`_
- `Zeeman States Label <Examples/States/ZeemanStates_Label.ipynb>`_

Hamiltonians
------------

- `CSA Hamiltonian <Examples/Hamiltonians/CSAHamiltonian.ipynb>`_
- `Dipolar Hamiltonian <Examples/Hamiltonians/DipolarHamiltonian.ipynb>`_
- `Quadrupolar Hamiltonian <Examples/Hamiltonians/QuadrupolarHamiltonian.ipynb>`_
- `Zeeman B1 JCoupling Dipolar Coupling <Examples/Hamiltonians/Zeeman_B1_JCoupling_DipolarCoupling.ipynb>`_